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我試圖讓一些示例代碼與OpenMS一起愉快地工作,並且遇到了很大的麻煩。我有(即發貨作爲例子只是一個小樣本程序):使用OpenMS命名空間時未定義的符號問題
#include <OpenMS/FILTERING/SMOOTHING/GaussFilter.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <stdio.h>
using namespace OpenMS;
using namespace std;
Int main(){
PeakMap exp;
MzMLFile mzdata_file;
mzdata_file.load("../sampledata_Centroidmode.mzML",exp);
GaussFilter g;
Param param;
param.setValue("gaussian_width",1.0);
g.setParameters(param);
g.filterExperiment(exp);
return 0;
}
我編譯:
g++ -Wall -IOpenMS-1.7.0/include -IOpenMS-1.7.0/contrib/include -I/Library/Frameworks/QtCore.framework/Headers -arch i386 scratch.cpp
它有錯誤的一大堆(其中約〜500KB大作,竟)。問題似乎在於「使用命名空間OpenMS;」這些錯誤的小樣本:
Undefined symbols:
"OpenMS::DataValue::DataValue(int)", referenced from:
OpenMS::Internal::MzMLHandler<OpenMS::MSExperiment<OpenMS::Peak1D, OpenMS::ChromatogramPeak> >::handleUserParam_(OpenMS::String const&, OpenMS::String const&, OpenMS::String const&, OpenMS::String const&, OpenMS::String const&)in cc7cSzjW.o
"OpenMS::DataValue::DataValue()", referenced from:
OpenMS::Internal::MzMLHandler<OpenMS::MSExperiment<OpenMS::Peak1D, OpenMS::ChromatogramPeak> >::handleUserParam_(OpenMS::String const&, OpenMS::String const&, OpenMS::String const&, OpenMS::String const&, OpenMS::String const&)in cc7cSzjW.o
"OpenMS::SourceFile::operator!=(OpenMS::SourceFile const&) const", referenced from:
OpenMS::Internal::MzMLHandler<OpenMS::MSExperiment<OpenMS::Peak1D, OpenMS::ChromatogramPeak> >::writeTo(std::basic_ostream<char, std::char_traits<char> >&)in cc7cSzjW.o
OpenMS::Internal::MzMLHandler<OpenMS::MSExperiment<OpenMS::Peak1D, OpenMS::ChromatogramPeak> >::writeTo(std::basic_ostream<char, std::char_traits<char> >&)in cc7cSzjW.o
OpenMS::Internal::MzMLHandler<OpenMS::MSExperiment<OpenMS::Peak1D, OpenMS::ChromatogramPeak> >::writeTo(std::basic_ostream<char, std::char_traits<char> >&)in cc7cSzjW.o
...
ld: symbol(s) not found
collect2: ld returned 1 exit status
沒有人有洞察力,以什麼我不這樣做對嗎?
哦,很好的電話。我已經添加了OpenMS庫,但我認爲我仍然需要Qt - Qt庫通常安裝在哪裏? – sbirch 2010-11-07 22:00:54
我認爲默認是/ usr/local/Trolltech/Qt- $ VERSION /,但我可能被誤認爲... – 2010-11-08 03:10:56
我實際上找到了另一種方法(Ree先生的方法也可能工作)。我用qmake -project編輯了.pro文件:(INCLUDEPATH + = OpenMS-1.7.0/include INCLUDEPATH + = OpenMS-1.7.0/contrib/include unix:LIBS + = OpenMS-1.7.0/contrib/lib unix:LIBS + = OpenMS-1.7.0/lib -lOpenMS)並使用qmake -makefile -spec macx-g ++/make。 – sbirch 2010-11-08 04:22:02